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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai |
| Regulated Operon: | pucABCDE |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Conserved groups |
|---|---|---|---|---|---|---|
| pucA | yurF | - | 3339945..3340937 | COG1975O | ||
| pucB | yurE | - | 3339331..3339948 | COG2068R | ||
| pucC | yurD | - | 3338501..3339334 | COG1319C | ||
| pucD | yurC | - | 3336263..3338500 | COG1529C | ||
| pucE | yurB | - | 3335751..3336272 | COG2080C |
| Operon evidence: | Northern blotting (5.3 kb transcript) |
|---|---|
| Reference: | Yoshida K, et al. (2003) |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| PucR | Negative | ND | ND | ND |
Beier L, et al. (2001): DB |
| SigA | Promoter | -40:+7 | 3341052..3341098 | CTTCGTTTGACTCTTTTTACAAATCCTCTTTCTATGTGTTTCATTTT |
Beier L, et al. (2002): PE HM |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| CGGGAGTCCGGCTTTTAAAAGCCGGACTTTTTTAGCCTCAGT >>>>>>>>> <<<<<<<<< |
pucE |
|