Regulated Operon: rapD

Genes
Genes Synonyms Direction Genome position Function COG ID Conserved groups
rapD ywpA + 3744349..3745413

 

Operon evidence: Genome analysis; upstream and downstream genes are on the opposite strand
Reference: Huang X & Helmann JD (1998)
Comments:


Promoters

Binding
factor
Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
YvaN Negative ND ND ND Ogura M & Fujita Y (2007): AR DB RG GS
SigA Promoter -41:+6 3744278..3744324 CTGTCAATGAGAGCCGTCAAAAGTTATGATATGATAATTATAGATTT Huang X & Helmann JD (1998): PE RO RG
Jarmer H, et al. (2001): HM
SigX Promoter -37:+5 3744267..3744308 AATGTAACCAACTGTCAATGAGAGCCGTCAAAAGTTATGATA Huang X & Helmann JD (1998): RG DB PE RO

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]
Downstream of
AAGCCGCTTTTTTTATCATGCGCGGCTGATTGAAAAACGCCCATTTTCTTATTATCTG
     >>>>>>>>>>>>>>>>   <<<<<<<<<<<<<<<<
3745390..3745424
-23..11
-12.1
rapD

Overview



Upper Region






Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai