Regulated Operon: rapI-phrI

Genes
Genes Synonyms Direction Genome position Function COG ID Conserved groups
rapI yddL + 547306..548481

 
phrI
+ 548438..548557

 

Operon evidence: Primer extension of phrI; genome analysis
Reference: McQuade RS, et al. (2001), Genbank AB001488
Comments:


Promoters

Binding
factor
Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
SigA Promoter -56:+14 548269..548338 AAGAATGCATTTTCATATCTGGCTTCGAGAAAAATGTTTGCTGATGTTGAAAATTTTTCGATTGAAGTCG McQuade RS, et al. (2001): PE RG
SigH Promoter -40:+2 548355..548396 ACAAGGAAATTTAATGCTCTCTAATGAATATTATCGTATGAG McQuade RS, et al. (2001): PE RG DB

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]
Downstream of
AAAAAGCTTAATCTTTTTTCGAAGGTTAAGCTTTTTCTTTTATTTA
     >>>>>>>>>>>    <<<<<<<<<<<
548585..548610
28..53
-13.1
phrI

Overview



Upper Region






Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai