 |
Copyright: Human Genome Center, Inst. Med.
Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai |
| Factor type | ND |
|---|---|
| SWISS-PROT | ND |
| SubtiList | ND |
| Consensus seq. | AGGTATT(-35) , GAATT(-10) |
| Comment | RNA Polymerase Sigma-30 Factor (Sigma-H). Non-essential sigma factor involved in expression of vegetative and early stationary-phase genes |
| Link to | Phylogenetic profile, Weight matrix & Motif alignment |
| Operon | Regulated Gene | Absolute position | Location | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| citG | citG | 3390439..3390486 | -43:+5 | AAAAATAAAAAGGATTTTTTGTGTCATTGGCGAATTATGATCTATTGA |
Feavers IM, et al. (1988): S1 DB, fumarase activity Tatti KM, et al. (1990): PE |
| yqxD-dnaG-sigA | dnaG | 2603346..2603394 | -42:+7 | CGATGAAGGGATTTTGCACTAAAGCATCGAATAATGTACGACGGAGTGT |
Qi FX & Doi RH (1990): PE RG |
| yqxD-dnaG-sigA | dnaG | 2603836..2603886 | -46:+5 | GCTTTTATGCAGGAGTTTAATGGAGGGATGGAGAATTACTCTTCTTAATGA |
Carter HL 3rd, et al. (1988): PE DB RG |
| ftsAZ | ftsA | 1596294..1596343 | -42:+8 | GATATAAAAGAGGATATACATAGGATATAACGAATATTTTCAATAAACAT |
Gonzy-Treboul G, et al. (1992): PE RG Gholamhoseinian A, et al. (1992): PE S1 RG Fukuchi K, et al. (2000): DP RG |
| hbs | hbs | 2385836..2385892 | -50:+7 | GAATCAGACTGAACTGTGAAGAAATGATAATAAACGAACTGAATGTATCCTTTTGGG |
Micka B, et al. (1991): PE Micka B & Marahiel MA (1992): PE NB Fernandez S & Alonso JC (1999): RG |
| kinA | kinA | 1469927..1469979 | -42:+11 | TAAGAATAGAAGGAGAATACTCATTTTCTAGCGAATCATACTAGGTAAAAGTC |
Predich M, et al. (1992): PE, in vitro addition of E-SigH Antoniewski C, et al. (1990): RG |
| lytE | lytE | 1018951..1018994 | -35:+9 | AAAAAAAGAGATACATATATATAGAGTTAACATTTGGGGAGGAA |
Ishikawa S, et al. (1998): PE |
| mreBCD-minCD | minC | 2859279..2859320 | None | GTAAAAAGGATTTTATCTTTTTTTGACGAAATGAGTATGTTG |
Lee S & Price CW (1993): RG |
| rapC-phrC | phrC | 429840..429882 | -40:+3 | TAGAGGATTTAGCCCTAGAAGTAGCAAAATATTACTATGAACA |
Carter HL 3rd, et al. (1990): PE RO, in-vitro transcription Lazazzera BA, et al. (1999): RG DB |
| rapE-phrE | phrE | 2660209..2660268 | -50:+10 | GAAGAGCTGGCATTGTTAGGAGGCAACCTTTTCGATTATAATGGAAAAATAGAGGATAGT |
McQuade RS, et al. (2001): PE RG DB |
| rapE-phrE | phrE | 2660258..2660299 | -38:+4 | TAGAGGATAGTATCATCTGTTTCAAGAAGATGGTATATGCTC |
McQuade RS, et al. (2001): PE RG DB |
| rapF-phrF | phrF | 3847007..3847047 | -36:+5 | TTGAAGATTTCGCTATTGATGTGGCAAAATATTATCATGAA |
McQuade RS, et al. (2001): PE RG DB |
| rapG-phrG | phrG | 4141080..4141121 | -38:+4 | TGAAGGAAAAATTGACTGCTGAGCCGAATAGAATATGTGAGG |
McQuade RS, et al. (2001): PE RG DB Ogura M, et al. (2003): DB NB RG |
| rapI-phrI | phrI | 548355..548396 | -40:+2 | ACAAGGAAATTTAATGCTCTCTAATGAATATTATCGTATGAG |
McQuade RS, et al. (2001): PE RG DB |
| rapK-phrK | phrK | 2062988..2063029 | -38:+4 | CACAGGAAAGACTCATATTAATGGAGAATAAAGTATACGAAG |
McQuade RS, et al. (2001): PE RG DB |
| spo0A | spo0A | 2518868..2518914 | -43:+4 | ATTTTTTTAGAGGGTATATAGCGGTTTTGTCGAATGTAAACATGTAG |
Predich M, et al. (1992): PE Chibazakura T, et al. (1995): S1 DB RG Eymann C, et al. (2001): NB DB; Western blot |
| spo0F | spo0F | 3809958..3810009 | -43:+9 | TTATAATTAAAGGAAATAGGAAAATCAAACAGAATACATACAATACTGCTTA |
Predich M, et al. (1992): PE, in-vitro transcription, dinucleotide priming Lewandoski M, et al. (1986): S1 |
| spo0M | spo0M | 954199..954240 | None | AATAATAGGAAAAAAGTATGAATCAAACGAATCTTTTTTCCT |
Han WD, et al. (1998): DB, in vitro experiments |
| dacF-spoIIAAB-sigF | spoIIAA | 2445021..2445069 | -44:+5 | GTCACGGTGAAGGAATTCATTCCGTCGAAATCGAAACACTCATTATCCG |
Wu JJ, et al. (1989): PE DP RG DB Wu JJ, et al. (1991): DP RG RO PE |
| spoVG | spoVG | 55787..55833 | -44:+3 | AAAAACGAGCAGGATTTCAGAAAAAATCGTGGAATTGATACACTAAT |
Segall J & Losick R (1977): NB DB Haldenwang WG & Losick R (1979): RO, RNAP purification Haldenwang WG & Losick R (1980): In vitro transcription, RNA polymerase-DNA binding assay Haldenwang WG, et al. (1981): In vitro transcription, RNAP purification Moran CP, et al. (1981): S1 RO DP dinucleotide-primed transcription Banner CD, et al. (1983): DP RO Johnson WC, et al. (1983): RO, RNAP purification Zuber P & Losick R (1983): S1 RG Carter HL, et al. (1986): RO, RNAP purification Lampe M, et al. (1986): RNA Polymerase and the regulation of transcription, pp. 177-183: DB RG Lampe M, et al. (1986): DB RG Dubnau E, et al. (1988): immunoblot, Western blot Zuber P., et al. (1989): SDM RG Eymann C, et al. (2001): DB NB |
| spoVS | spoVS | 1769772..1769813 | None | AAAAGCAGGAATATAGCAACTCCTTAGTGAATATAGTAAAAA |
Resnekov O, et al. (1995): RG NB |
| ureABC | ureA | 3769375..3769422 | -44:+4 | AACAATTGGAAGGAATTCAGATTTTAATTGTCGAACTAGTCAGACAAG |
Wray LV Jr, et al. (1997): PE RG |
| yoxA-dacC | yoxA | 2000874..2000918 | None | TATTTGATAGGGGAAAATATAAAATGGAGGAAATATGGTACAGTA |
Pedersen LB, et al. (1998): RG SDS-PAGE |
| ytxGHJ | ytxG | 3048086..3048135 | -45:+5 | AAAGCTTATTAAAGGATTTTCTTACATAACGGAGAATAGTATGTATACAG |
Varon D, et al. (1996): PE DB RG, plasmid integration |
| yvyD | yvyD | 3631596..3631639 | -39:+5 | CAGCAGGAATTGTAAAGGGTAAAAGAGAAATAGATACATATCCT |
Drzewiecki K, et al. (1998): PE NB DB Eymann C, et al. (2001): PE |
| racA | ywkC | ND | ND | ND |
Ben-Yehuda S, et al. (2003): DB RG Wu LJ & Errington J (2003): DB Western blot |
|