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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai |
| Regulated Operon: | sspN-tlp |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Conserved groups |
|---|---|---|---|---|---|---|
| sspN | + | 1930264..1930410 | ||||
| tlp | + | 1930447..1930698 |
| Operon evidence: | lacZ transcriptional fusion to tlp |
|---|---|
| Reference: | Cabrera-Hernandez A, et al. (1999) |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| SigF | Promoter | -39:+3 | 1930210..1930251 | GTATTCATGTTTACCCCTCCTTTTGAGAAACCTATCTGTTGA |
Cabrera-Hernandez A, et al. (1999): PE RG |
| SigG | Promoter | -40:+13 | 1930210..1930262 | GTATTCATGTTTACCCCTCCTTTTGAGAAACCTATCTGTTGAGGAGGGATAAA |
Cabrera-Hernandez A, et al. (1999): PE DB OV RG |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| AAAAACCAGGGAAACCTGGTTTTTTTCTTTCTGA >>>>> <<<<< |
tlp |
|