Regulated Operon: ssuBACD-ygaN

Genes
Genes Synonyms Direction Genome position Function COG ID Conserved groups
ssuB ygaL + 961394..962161
COG1116P ssuB-BAC  
ssuA yzeA + 962179..963177
COG0715P ssuA-BAC  
ssuC yzeB + 963174..964004
COG0600P ssuC-BAC  
ssuD yzeC + 964027..965157
COG2141C ssuD-BAC  
ygaN
+ 965261..965797

 

Operon evidence: Northern blot (4.7 kb and 4.0 kb transcripts)
Reference: Van der Ploeg JR, et al. (2001)
Comments:


Promoters

Binding
factor
Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
SigA Promoter -47:+15 961224..961285 ATTTAAAAAAGAGTTGACATATCGGAATAATTTGAATTAACATGTTATTCAAACAAAAAAAC Van der Ploeg JR, et al. (2001): PE
YjbD Negative ND ND ND Erwin KN, et al. (2005): RG DB
YrzC Negative -60:-1 961211..961270 TATCAAAAATCGTATTTAAAAAAGAGTTGACATATCGGAATAATTTGAATTAACATGTTA Even S, et al. (2006): GS HM AR

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]
Downstream of
GTTTAACTAAAATACAGCCCCCCGAACATGGTATGATATTCAAAAAAAGGGGGCTTTTTTTCTGAAAACA
               >>>>>>>>>>>>>>>>        <<<<<<<<<<<<<<<<
965173..965212
16..55
-14.3
ssuD
CATTAGAATGGGCGGCTTCAGGCCGTCTGTTTTACAAAGCGGTA
         >>>>>>>>   <<<<<<<<
965801..965819
4..22
-15.4
ygaN

Overview



Upper Region






Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai