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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai |
| Regulated Operon: | ssuBACD-ygaN |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Conserved groups |
|---|---|---|---|---|---|---|
| ssuB | ygaL | + | 961394..962161 | COG1116P | ssuB-BAC | |
| ssuA | yzeA | + | 962179..963177 | COG0715P | ssuA-BAC | |
| ssuC | yzeB | + | 963174..964004 | COG0600P | ssuC-BAC | |
| ssuD | yzeC | + | 964027..965157 | COG2141C | ssuD-BAC | |
| ygaN | + | 965261..965797 |
| Operon evidence: | Northern blot (4.7 kb and 4.0 kb transcripts) |
|---|---|
| Reference: | Van der Ploeg JR, et al. (2001) |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| SigA | Promoter | -47:+15 | 961224..961285 | ATTTAAAAAAGAGTTGACATATCGGAATAATTTGAATTAACATGTTATTCAAACAAAAAAAC |
Van der Ploeg JR, et al. (2001): PE |
| YjbD | Negative | ND | ND | ND |
Erwin KN, et al. (2005): RG DB |
| YrzC | Negative | -60:-1 | 961211..961270 | TATCAAAAATCGTATTTAAAAAAGAGTTGACATATCGGAATAATTTGAATTAACATGTTA |
Even S, et al. (2006): GS HM AR |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| GTTTAACTAAAATACAGCCCCCCGAACATGGTATGATATTCAAAAAAAGGGGGCTTTTTTTCTGAAAACA >>>>>>>>>>>>>>>> <<<<<<<<<<<<<<<< |
ssuD | |||
| CATTAGAATGGGCGGCTTCAGGCCGTCTGTTTTACAAAGCGGTA >>>>>>>> <<<<<<<< |
ygaN |
|