Regulated Operon: yhdG

Genes
Genes Synonyms Direction Genome position Function COG ID Conserved groups
yhdG bcaP + 1022658..1024055

 

Operon evidence: Northern blotting (1.5 kb transcript)
Reference: Yoshida K, et al. (2003), Genbank Y14082
Comments:

Promoters

Binding
factor		 Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
CodY Negative -64:-28 1023160..1023195 AATTTGTCGATTTTTCTAACAATTTTGTTTTCATTT Belitsky BR, et al. (2011): GS FP RG
CodY Negative +62:+95 1023284..1023317 GTTACTCATGAATTCAGAAAATTCAAATAAAATA Belitsky BR, et al. (2011): FP RG GS
SigA Promoter -50:+10 1023173..1023232 TTCTAACAATTTTGTTTTCATTTTTGCAATTTTATATATAATATTGAGTAGGAGAAAGGA Belitsky BR, et al. (2011): PE

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]		 Downstream of
ATAAAGAGAGCGGCCATACAGGCCGCCTCTTTTCTGTTCTTGGC
     >>>>>>>>>>     <<<<<<<<<
1024760..1024783
705..728
-18.3
 yhdG

Overview



Upper Region
Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai