Regulated Operon: ytxGHJ

Genes
Genes Synonyms Direction Genome position Function COG ID Conserved groups
ytxG csb40 - 3047593..3048015
COG4768R  
ytxH csb40 - 3047107..3047562
COG4980R  
ytxJ csb40 - 3046757..3047083

 

Operon evidence: Northern blotting (1.3 kb transcript)
Reference: Varon D, et al. (1996), Eymann C, et al. (2001)
Comments:


Promoters

Binding
factor
Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
SigB Promoter -41:+5 3048037..3048082 AGTACACATGTTTATGATTGAAGAAAACGGGTAAACAGCAGTATAT Varon D, et al. (1996): PE DB RG, plasmid integration
SigH Promoter -45:+5 3048086..3048135 AAAGCTTATTAAAGGATTTTCTTACATAACGGAGAATAGTATGTATACAG Varon D, et al. (1996): PE DB RG, plasmid integration

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]
Downstream of
AAAAAGCGTCCAGATATCATCTGGCGCTTTTTTTTGTAAAAA
     >>>>>>>>>>   <<<<<<<<<
3046729..3046750
7..28
-13.6
ytxJ

Overview



Upper Region






Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai