Regulated Operon: ywsC-ywtABC

Genes
Genes Synonyms Direction Genome position Function COG ID Conserved groups
ywsC pgsB, capB - 3698473..3699654

x0075-STA capB-STA x0075-STA  
ywtA pgsC, capC - 3698009..3698458

 
ywtB pgsAA, pgsA, capA - 3696848..3697990

pgsA-BAC pgsA-STA-1 pgsA-STA-2 pgsA-STR pgsA-STA-1  
ywtC pgsE, capE - 3696666..3696833

 

Operon evidence: Northern blotting (3.0 kb transcript)
Reference: Urushibata Y, et al. (2002), Genbank Z92954
Comments:


Promoters

Binding
factor
Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
DegU Positive -47:-23 3700687..3700711 ACATAATGCCGATTGAGAATTCATA Ohsawa T, et al. (2009): GS FT
DegU Positive -47:-23 3700687..3700711 ACATAATGCCGATTGAGAATTCATA Ohsawa T, et al. (2009): GS FT
SigA Promoter -50:+10 3700655..3700714 GTTACATAATGCCGATTGAGAATTCATAGTGATTCTATATACTGATGAATGAATTTACAA Ohsawa T, et al. (2009): PE

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]
Downstream of
AAAAAGAGAGTGTCTGATGAGACACTCTCTTTTTATTTGCCCAG
     >>>>>>>>>>    <<<<<<<<<<
3697606..3697629
-781..-758
-18.0
ywtB

Overview



Upper Region






Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai