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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai |
| Regulated Operon: | clpP |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Conserved groups |
|---|---|---|---|---|---|---|
| clpP | yvdN | + | 3546234..3546827 | COG0740OU | clpP-BAC-1 clpP-BAC-2 clpP-STA clpP-STR |
| Operon evidence: | Northern blotting (0.8 kb transcript) |
|---|---|
| Reference: | Gerth U, et al. (1996), Gerth U, et al. (1998) |
| Comments: | mRNA length not quite consistent with terminator position |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| CtsR | Negative | -36:-20 | 3546165..3546181 | TTTGACCTTTATTGACC |
Derre I, et al. (1999): GS FT |
| SigA | Promoter | -50:+20 | 3546151..3546220 | AGGCCAGCTTTTTGTTTGACCTTTATTGACCAAAAATGTATCATGTAACTACATACTTACCTAAAAGGTG |
Gerth U, et al. (1998): PE HM |
| SigB | Promoter | -45:+19 | 3546087..3546150 | CATACGATGGTTTGAACCCCTGTATTTTTGGGGAAAATGGGAAAAAGAGACGACTTTGCATATC |
Gerth U, et al. (1998): PE DB HM Voelker U, et al. (1994): 2D PAGE |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| CACAACCTGCAAGAGCTGCGTCTCTTGCAGGTTTTTTTCATTTCAA >>>>>>>>>>> <<<<<<<<<<<< |
clpP |
|