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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai |
| Regulated Operon: | cotF |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Conserved groups |
|---|---|---|---|---|---|---|
| cotF | + | 4167110..4167592 | COG5577M |
| Operon evidence: | Northern blotting; upstream and downstream genes are transcribed in the opposite direction |
|---|---|
| Reference: | BSORF |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| SigK | Promoter | -43:+2 | 4167039..4167083 | AACATCATGAACAACATTGAGCGTTGGGCATATGCTGATATGGAA |
Cutting S, et al. (1991): PE |
| SpoIIID | Positive | ND | ND | ND |
Eichenberger P, et al. (2004): GS AR |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| AAACAAGCAGCAAAGGAGTTCCCTTTGCTGCTATTTCTGCTGATCCTT >>>>>>>>>>> <<<<<<<<<<< |
cotF |
|