Regulated Operon: gltAB

Genes
Genes Synonyms Direction Genome position Function COG ID Conserved groups
gltA
- 2010070..2014632
COG0069E  
gltB
- 2008572..2010053
COG0493ER gltB-STA x1459-BAC  

Operon evidence: Northern blotting (6.1 kb transcript)
Reference: Yoshida K, et al. (2003)
Comments:


Promoters

Binding
factor
Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
GltC Positive -90:+20 2014669..2014778 GTTTGTCTCACATCCATCTATCTCATTTTGAGATTCTTTTGATCTAAATTATATATTGTTTATATCGTTTTGAAAACCTACAATGATTATAGAGTTGTTAGATTTTATGA Belitsky BR, et al. (1995): SDM DP
Piccossi S, et al. (2007): FP
Commichau FM, et al. (2007): RG, in vivo protein interaction assay
Bohannon DE, et al. (1989): S1
GltR Positive -71:-57 2014745..2014759 ATCTCATTTTGAGAT Belitsky BR, et al. (1997): DB DP SDM
GltR Positive -49:-35 2014723..2014737 ATCTAAATTATATAT Belitsky BR, et al. (1997): DB DP SDM
SigA Promoter -47:+18 2014671..2014735 CTAAATTATATATTGTTTATATCGTTTTGAAAACCTACAATGATTATAGAGTTGTTAGATTTTAT Bohannon DE, et al. (1989): S1
Belitsky BR & Sonenshein AL (1997): PE
TnrA Negative +1:+26 2014663..2014688 AGAGTTGTTAGATTTTATGACCGGTA Belitsky BR, et al. (2000): FT
Yoshida K, et al. (2003): AR HM GS

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]
Downstream of
AGAAACCGGTCTGGCTGCCAGCCGGTTTCTTTTTTTATTC
     >>>>>>>>>   <<<<<<<<
2008525..2008544
28..47
-12.8
gltB

Overview



Upper Region






Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai