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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai |
| Regulated Operon: | lytE |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Conserved groups |
|---|---|---|---|---|---|---|
| lytE | cwlF | + | 1018998..1020002 | COG0791M |
| Operon evidence: | transcriptional fusion; Northern blotting (1.1 kb transcript) |
|---|---|
| Reference: | Ishikawa S, et al. (1998), Genbank Y14082 |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| SigH | Promoter | -35:+9 | 1018951..1018994 | AAAAAAAGAGATACATATATATAGAGTTAACATTTGGGGAGGAA |
Ishikawa S, et al. (1998): PE |
| SigA | Promoter | 50:+10 | 1018886..1018945 | ACATGAAGTCAAGACTATTTCTGATGGGAATCTATCCTTATAATAGAAATCAATAAGATT |
Ishikawa S, et al. (1998): PE |
| Spo0A | Negative | ND | ND | ND |
Molle V, et al. (2003): GS CH |
| YycF | Positive | -57:-34 | 1018879..1018900 | ATTTGTCACATGAAGTCAAGAC |
Bisicchia P, et al. (2007): AR RG GS HM |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| GAAAACCCGTTCATTGGAACGGGTTTTTTTCATTAGAC >>>>>>> <<<<<<< |
lytE |
|