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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai |
| Regulated Operon: | rapA-phrA |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Conserved groups |
|---|---|---|---|---|---|---|
| rapA | spo0L | + | 1315869..1317005 | COG5091 | ||
| phrA | gsiAB | + | 1316995..1317129 |
| Operon evidence: | hybrid formation with RNA probes; nuclease protection experiments |
|---|---|
| Reference: | Mueller JP, et al. (1992), Genbank AF034138 |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| ComA | Positive | -75:-36 | 1315763..1315802 | TTGCGGTTAGCCGAAATTCGACAATTGCGGTTATTTTGCG |
Mueller JP, et al. (1992): DP RO DB |
| Spo0A | Negative | ND | ND | ND |
Mueller JP & Sonenshein AL (1992): DB RG Molle V, et al. (2003): GS CH |
| SigA | Promoter | -50:+19 | 1315788..1315856 | TGCGGTTATTTTGCGTTCTTCTTTTTCTTGTAAATATGATAAAATATGACATATCTCGGGTAATTCAAA |
Mueller JP, et al. (1992): PE Jarmer H, et al. (2001): PE SDM HM |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| ATAAAAAAAGACCCTTAGGGCTTTTTATTTCTTCAGCTTCCATTCTTTTAT >>>>>>>>>> <<<<<<<<< |
phrA |
|