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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai |
| Regulated Operon: | rocABC |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Conserved groups |
|---|---|---|---|---|---|---|
| rocA | ipa-76d | - | 3878966..3880513 | COG1012C | x0155-BAC-1 x0155-STA | |
| rocB | ipa-77d | - | 3877192..3878892 | COG4187E | x0240-BAC | |
| rocC | ipa-78d | - | 3875780..3877192 | COG0833E | x0901-BAC-1 |
| Operon evidence: | Genome analysis |
|---|---|
| Reference: | Calogero S, et al. (1994) |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| AhrC | Positive | -18:+1 | 3880550..3880568 | CTTGCATTTTTATTCATAT |
Klingel U, et al. (1995): GS FT |
| RocR | Positive | -217:-194 | 3880707..3880730 | CCTCCGCAAAATAATTTTGCATTT |
Ali NO, et al. (2003): FT DP Calogero S, et al. (1994): DB |
| RocR | Positive | -173:-145 | 3880658..3880686 | AAAACGCAAAATAAATTTGCGTTCAAGAT |
Ali NO, et al. (2003): FT DP Calogero S, et al. (1994): DB |
| SigL | Promoter | -35:+5 | 3880546..3880585 | AAGAAAATGGCATGATTCTTGCATTTTTATTCATATGCGA |
Calogero S, et al. (1994): PE |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| AAAAAGCTCTCCGGGAGGCCGGAGAGCTTTTTTTACGTGTTA >>>>>>>>> <<<<<<<<< |
rocC |
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