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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai |
| Regulated Operon: | rocG |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Conserved groups |
|---|---|---|---|---|---|---|
| rocG | ipa-75d | - | 3880740..3882014 | COG0334E | gudB-BAC |
| Operon evidence: | Genome analysis |
|---|---|
| Reference: | Belitsky BR & Sonenshein AL (1999) |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| RocR | Positive | downstream of rocG | 3880707..3880730 | CCTCCGCAAAATAATTTTGCATTT |
Belitsky BR & Sonenshein AL (1999): RG DP Ali NO, et al. (2003): FT DP |
| RocR | Positive | downstream of rocG | 3880658..3880686 | AAAACGCAAAATAAATTTGCGTTCAAGAT |
Belitsky BR & Sonenshein AL (1999): RG DP Ali NO, et al. (2003): FT DP |
| SigL | Promoter | -34:+8 | 3882094..3882135 | CAAAAGCTGGTACGGATCTTGCATGATGATAAGGGTGAATCC |
Belitsky BR & Sonenshein AL (1999): PE |
| Spo0A | ND | ND | ND | ND |
Molle V, et al. (2003): GS CH |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| CCTCCGCAAAATAATTTTGCATTTGTTTTTTGCGTA >>>>>> <<<<<< |
rocG |
|