Regulated Operon: sspG-yurS

Genes
Genes Synonyms Direction Genome position Function COG ID Conserved groups
sspG
+ 3354066..3354212

 
yurS
+ 3354212..3354487

 

Operon evidence: primer extension analysis of the downstream yurS gene; genes further downstream are on the opposite strand
Reference: Bagyan I, et al. (1998)
Comments:


Promoters

Binding
factor
Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
GerE Positive -99:-68 3353944..3353975 TTACCAAATCAAATGCTTTCCTTCGACCTTTT Bagyan I, et al. (1998): DB RG
GerE Positive -63:-31 3353980..3354012 TAATGTGGAAAAACCGCGAAGTTCGTCCAATCT Bagyan I, et al. (1998): DB RG
SigK Promoter -40:+3 3354003..3354045 CGTCCAATCTCTTTACTCTCCTATCGAATATCCTGTCACTATC Bagyan I, et al. (1998): PE RG DB

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]
Downstream of
AAAAACCGCGGCCCCTCGGCCAGCGGTTTTTCTTCTGCATA
     >>>>>>>>    <<<<<<<<<
3354492..3354512
5..25
-15.2
yurS

Overview



Upper Region






Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai