Transcription factor: GerE

Factor type	LuxR/UhpA
SWISS-PROT	ND
SubtiList	ND
Consensus seq.	RWWTRGGY--YY
Comment	Positive(?) regulator which affects transcription of many genes in the mother cell during the late stages of sporulation
Link to	Phylogenetic profile, Weight matrix & Motif alignment

Operon	Regulated Gene	Sigma	Regulation	Absolute position	Location	Binding seq.(cis-element)	Experimental evidence
cgeAB	cgeA	SigK	Positive	`2148574..2148605`	`-72:-41`	AATAGATGAAAAATAGATCAGGTACGGCGTTC	Roels S, et al. (1995): HB
cgeAB	cgeA	SigK	Positive	`2148563..2148594`	`-83:-52`	CATTTTCCTTAAATAGATGAAAAATAGATCAG	Roels S, et al. (1995): HB
cgeAB	cgeA	SigK	Positive	`2148546..2148577`	`-100:-69`	CTCCATTAAAAAATCAGCATTTTCCTTAAATA	Roels S, et al. (1995): HB
cgeAB	cgeA	SigK	Positive	`2148520..2148551`	`-126:-95`	TCGATTTATGGTATAGGCTATGTCCACTCCAT	Roels S, et al. (1995): HB
cgeAB	cgeA	SigK	Positive	`2148498..2148529`	`-148:-117`	CTGTTTCACAATATGTGCGACTTCGATTTATG	Roels S, et al. (1995): HB
cgeCDE	cgeC	SigK	Positive	`2148593..2148624`	`-126:-95`	CTGTTATTTGGTATGAGTCGAACGCCGTACCT	Roels S, et al. (1995): HB
cotA	cotA	SigK	Negative	ND	ND	ND	Zheng L, et al. (1992): DB RO
cotB	cotB	SigK	Positive	`3715983..3716002`	`-81:-62`	GAAAATGGGTATTCGCGGAA	Zheng L, et al. (1992): GS FT RO
cotB	cotB	SigK	Positive	`3715962..3715982`	`-71:-41`	AAAGCGACAATTAGGCTATTG	Zheng L, et al. (1992): GS FT RO
cotC	cotC	SigK	Positive	`1905347..1905362`	`-141:-126`	CGTTTGGGCCGATGAA	Zheng L, et al. (1992): GS FT RO
cotC	cotC	SigK	Positive	`1905277..1905298`	`-77:-56`	ATCATTTGGACAGCCCTTTTTT	Zheng L, et al. (1992): GS FT RO
cotD	cotD	SigK	Pos/Neg	`2333074..2333105`	`-63:-32`	CACACTTTTAAAATAGGTCTTTGCATCAGAAC	Ichikawa H, et al. (1999): FT
cotD	cotD	SigK	Pos/Neg	`2333052..2333083`	`-41:-10`	GCATCAGAACATGTACCCCTTATTTTTCATAA	Ichikawa H, et al. (1999): FT
cotG	cotG	SigK	Positive	`3717107..3717138`	`-85:-54`	TCCTTACAAATTTTAGGCTTTTATTTTTATAA	Sacco M, et al. (1995): DB
cotH	cotH	SigK	Negative	`3717114..3717131`	`+66:+83`	AATAAAAGCCTAAAATTT	Baccigalupi L, et al. (2004): RG FT, binding site mutation
cotM	cotM	SigK	Negative	`1926077..1926100`	`-42:-19`	TTATGCGTTCACCCATTTATAATC	Henriques AO, et al. (1997): DB RG
yozR	yozR	SigK	Negative	ND	ND	ND	Ferguson CC, et al. (2007): DB RG FP
ydgBA-cotP	ydgB	SigK	Negative	`602754..602777`	None	CAAGGAACAATTGGGTGCAGCGGC	Henriques AO, et al. (1997): DB RG
cotVWX	cotV	SigK	Positive	`1252073..1252094`	`-53:-32`	AAATTGGTTATTTTTATTATTC	Zhang J, et al. (1994): FT RO
cotVWX	cotX	SigK	Positive	`1251245..1251265`	`-70:-50`	TAAAAAATAGGGTTCTTCATC	Zhang J, et al. (1994): FT RO
cotVWX	cotX	SigK	Positive	`1251227..1251245`	`-50:-32`	CAGGATATATGACTCAGTC	Zhang J, et al. (1994): FT RO
cotYZ	cotY	SigK	Positive	`1250577..1250600`	`-57:-34`	TGAATATATAGACGTTCACCCACA	Zhang J, et al. (1994): FT RO
cotYZ	cotY	SigK	Positive	`1250576..1250592`	`-49:-33`	TAGACGTTCACCCACAC	Zhang J, et al. (1994): FT RO
cwlH	cwlH	SigK	Positive	`2649808..2649828`	`-160:-140`	CCCAACTTAGGTGATGTCAGG	Nugroho FA, et al. (1999): RG PE HM
rnc-smc-ftsY	ftsY	SigK	Positive	`1669339..1669370`	`-83:-62`	AAGAAGTCAAACTTGGACGAATGGAAGTCGAG	Kakeshita H, et al. (2000): PE NB
rnc-smc-ftsY	ftsY	SigK	Positive	`1669289..1669320`	`-143:-111`	GAAAGAAATGAAACGCCTGTATAAACAAAAAA	Kakeshita H, et al. (2000): PE NB
gerPABCDEF	gerPA	SigK	Negative	ND	ND	ND	Behravan J, et al. (2000): DB RG Eichenberger P, et al. (2004): DB AR
spoIVCB-spoIIIC	spoIVCB	SigE/SigK	Negative	`2652945..2652975`	`-9:+22`	ATACATTTACATATAGGCTTTTGCCTACATA	Zheng L, et al. (1992): RO Ichikawa H, et al. (1999): FT RG
spoIVCB-spoIIIC	spoIVCB	SigE/SigK	Negative	`2652953..2652984`	`-1:+31`	ACATATAGGCTTTTGCCTACATACTTTTGTGG	Zheng L, et al. (1992): RO Ichikawa H, et al. (1999): FT RG
sspG-yurS	sspG	SigK	Positive	`3353944..3353975`	`-99:-68`	TTACCAAATCAAATGCTTTCCTTCGACCTTTT	Bagyan I, et al. (1998): DB RG
sspG-yurS	sspG	SigK	Positive	`3353980..3354012`	`-63:-31`	TAATGTGGAAAAACCGCGAAGTTCGTCCAATCT	Bagyan I, et al. (1998): DB RG
yjcB-yjcZ-spoVIF	yjcZ	SigK	Positive	`1253007..1253052`	`-74:-29`	TATGATCAATCGTAAATCCGCAAACGCCCTATGCGAATATCCAAGC	Kuwana R, et al. (2003): NB DB HM
yoaN	yoaN	SigK	Negative	ND	ND	ND	Costa T, et al. (2004): NB SDS-PAGE RG, GFP localization
yxeE	yxeE	SigK	Positive	`4065516..4065589`	`-53:+21`	TCCTTTTTTGGGCGAATGCCGTGCCACTGTGCCAATGACTACATAAGTTATAAGGAATTCACCCACAAGGAGAC	Kuwana R, et al. (2008): DB NB