Regulated Operon: trxA

Genes
Genes Synonyms Direction Genome position Function COG ID Conserved groups
trxA trx - 2913024..2913338
COG3118O trxA-BAC-1 trxA-BAC-2 trxA-STA trxA-BAC-1  

Operon evidence: Northern blot (0.6 kb transcript for the SigB promoter, 0.38 kb transcript for the SigA promoter)
Reference: Scharf C, et al. (1998), Chen NY, et al. (1989)
Comments:


Promoters

Binding
factor
Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
CtsR Negative ND ND ND Kruger E, et al. (1998): DB
SigA Promoter -37:+20 2913349..2913405 AAAATAGCGTGAACGAATGGGAGATGCTATACTAAAAATCATCATTTCACATTGGAG Scharf C, et al. (1998): PE, 2D-gel
SigB Promoter -40:+2 2913580..2913621 TCAGGTTTTAAAACAGCTCCGGCAGGGCATGGTAAAGTACAT Scharf C, et al. (1998): PE, 2D-gel
Petersohn A, et al. (1999): HB

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]
Downstream of
CCAGAGCGATTCCGATTGAGGGATCGCTTTTTTTATTCGCCA
     >>>>>>>>      <<<<<<<<
2912979..2913000
24..45
-14.0
trxA

Overview



Upper Region






Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai