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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai |
| Regulated Operon: | yra |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Conserved groups |
|---|---|---|---|---|---|---|
| adhA | + | 2756312..2757361 | COG1064R | acoA-STR | ||
| yraA | + | 2757492..2758001 | COG0693R | yraA-BAC-2 |
| Operon evidence: | Northern blotting (1.8 kb transcript for adhA-yraA, 0.5 kb transcript for yraA) |
|---|---|
| Reference: | Nguyen TT, et al. (2009) |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| SigA | Promoter | -50:+10 | 2756189..2756248 | TTTTAAAAAACCCTTGCCTTAAAGCAGACTTTAAGGTTTATCGTTATGTTGAAGACACCA |
Nguyen TT, et al. (2009): 5' RACE |
| YraB | Positive | -40:+1 | 2756199..2756240 | CCCTTGCCTTAAAGCAGACTTTAAGGTTTATCGTTATGTTGA |
Nguyen TT, et al. (2009): GS DB |
| SigM | Promoter | ND | ND | ND |
Thackray PD, et al. (2003): RG |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| TTAAAATAACAAGAAGGCACAGACTGTTCGGGTCTGTGCCTTTTTTAAAATTAAG >>>>>>>>>> <<<<<<<<<< |
yraA |
|