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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai |
| Regulated Operon: | ywnJ |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Conserved groups |
|---|---|---|---|---|---|---|
| ywnJ | - | 3759169..3759591 |
| Operon evidence: | Genome analysis |
|---|---|
| Reference: | Cao M & Helmann JD (2002), Presecan E, et al. (1997) |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| SigF | Promoter | -34:+6 | 3759673..3759712 | AACAGTCTTAATGAAGAAAACGTCTATCCTTGTGATGGGC |
Wang S, et al. (2006): AR, Race-PCR |
| SigW | Promoter | -44:+9 | 3759619..3759671 | TTTTTTTCTGTTACTTTTTGCTTTGTTTTACCGTCTATGTAGTTACATGTAGG |
Cao M, et al. (2002): AR Cao M & Helmann JD (2004): RO PE |
| SigX | Promoter | -44:+9 | 3759619..3759671 | TTTTTTTCTGTTACTTTTTGCTTTGTTTTACCGTCTATGTAGTTACATGTAGG |
Cao M & Helmann JD (2004): ROMA RG PE Cao M, et al. (2002): AR |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| TTAAAGCCGGCTGTCTTGATTTCAGACGCCGGCTTTTGTCTTTCTTAG >>>>>>>>>>>>> <<<<<<<<<<< |
ywnJ |
|