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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai |
| Regulated Operon: | ywoA |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Conserved groups |
|---|---|---|---|---|---|---|
| ywoA | bcrC | + | 3757569..3758150 |
| Operon evidence: | Northern blotting (0.6 kb transcript) |
|---|---|
| Reference: | Cao M & Helmann JD (2002), Presecan E, et al. (1997), Ohki R, et al. (2003) |
| Comments: | Transcription of ywoA (bcrC) is independent of the BceRS two-component system. (Ohki R, et al. 2003. PMID: 12890034) |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| SigM | Promoter | -38:+6 | 3758484..3758527 | TTATTTGAAACTTTTCATGAGTAAGATTAGTCTACTAAATATAA |
Cao M & Helmann JD (2002): HB PE DB RG Cao M, et al. (2002): AR Ohki R, et al. (2003): NB RG DB Thackray PD, et al. (2003): RG Mascher T, et al. (2003): HB |
| SigX | Promoter | -38:+6 | 3758484..3758527 | TTATTTGAAACTTTTCATGAGTAAGATTAGTCTACTAAATATAA |
Cao M & Helmann JD (2002): ROMA AR DB RG PE HB Cao M, et al. (2002): AR Ohki R, et al. (2003): NB RG DB |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| CAAAAGCCGGCGTCTGAAATCAAGACAGCCGGCTTTAATATTTCTCAT >>>>>>>>>> <<<<<<<<<<< |
ywoA |
|