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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai |
| Regulated Operon: | yxeE |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Conserved groups |
|---|---|---|---|---|---|---|
| yxeE | + | 4065597..4065962 |
| Operon evidence: | Northern blotting (0.3 kb transcript) |
|---|---|
| Reference: | Yoshida K, et al. (2000), Kuwana R, et al. (2008) |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| GerE | Positive | -53:+21 | 4065516..4065589 | TCCTTTTTTGGGCGAATGCCGTGCCACTGTGCCAATGACTACATAAGTTATAAGGAATTCACCCACAAGGAGAC |
Kuwana R, et al. (2008): DB NB |
| SigK | Promoter | -37:+11 | 4065531..4065579 | ATGCCGTGCCACTGTGCCAATGACTACATAAGTTATAAGGAATTCACCC |
Eichenberger P, et al. (2004): Race-PCR Takamatsu H, et al. (2000): SDS-PAGE Kuwana R, et al. (2008): DB NB PE |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| TGTAGTTCCTCTTTGACGGAATTTCTTTTCATTCAA >>>>>> <<<<<<< |
yxeE |
|