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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai |
| Regulated Operon: | yxkC |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Conserved groups |
|---|---|---|---|---|---|---|
| yxkC | + | 3989232..3989873 |
| Operon evidence: | Northern blotting (0.7 kb transcript); downstream gene is on the opposite strand |
|---|---|
| Reference: | Serizawa M, et al. (2004), Yoshida K, et al. (2003), Yoshida K, et al. (2000) |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| SigD | Promoter | ND | 3989157..3989206 | ATATTGACTAAGAGAAATAATATAGGCATTATAGTACATATGTTTCGTAC |
Serizawa M, et al. (2004): AR NB |
| TnrA | Negative | ND | 3989201..3989217 | TCGTACATTTTATTACA |
Yoshida K, et al. (2003): AR HM GS |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| AACAAGGGTGCCTGTTTAGGCACCCTTGTTCTTTAAAAAA >>>>>>>> <<<<<<<< |
yxkC |
|