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Copyright: Human Genome Center, Inst. Med.
Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai |
| Factor type | TRAP |
|---|---|
| SWISS-PROT | ND |
| SubtiList | ND |
| Consensus seq. | (G/U)AG repeats |
| Comment | tryptophan operon RNA-binding attenuation protein (TRAP). Regulation of tryptophan biosynthesis (required for transcription and translation) attenuation |
| Link to | Phylogenetic profile |
| Operon | Regulated Gene | Sigma | Regulation | Absolute position | Location | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|---|---|
| pabBAC-sul-folBK-yazB-yacF-lysS | pabA | SigA | Negative | 84236..84287 | None | GAGCATTAGAGCTGAGCGAAGAAGAGACAAAAATTAGATGAGGTGAGCGGAG |
Kane JF (1977): DB, anthranilate synthase activity, tryptophan excretion measurement Babitzke P, et al. (1994): filter binding assay Yang M, et al. (1995): RG DP SDM Lee AI, et al. (1996): DB RG Du H, et al. (1997): FT, in-vitro translation Valbuzzi A & Yanofsky C (2001): DB RG Yakhnin H, et al. (2004): RG DB GS |
| trpEDCFBA-hisC-tyrA-aroE | trpE | SigA | Negative | 2377529..2377584 | None | TAGAATGAGTTGAGTTAGAGAATAGGGTAGCAGAGAATGAGTTTAGTTGAGCTGAG |
Steinberg W (1974): anthranilate and tryptophan synthase measurement Kane JF (1977): DB, tryptophan excretion measurement Shimotsu H & Henner DJ (1984): DP Shimotsu H, et al. (1986): NB DP SDM RG Kuroda MI, et al. (1988): DP RG Gollnick P, et al. (1990): DB RG OV Babitzke P, et al. (1992): RG OV Otridge J & Gollnick P (1993): RO NB GS Babitzke P & Yanofsky C (1993): RO NB OV GS DP Babitzke P, et al. (1994): filter binding assay, FT Antson AA, et al. (1995): DP RG SDM Merino E, et al. (1995): RG SDM DP Lee AI, et al. (1996): DB RG DP Yang M, et al. (1997): RG GS DB Du H & Babitzke P (1998): RG DB, in-vitro translation, ribosome toeprint, RNA structure mapping Sudershana S, et al. (1999): DP RG SDM DB GS OV NB, in-vitro transcription Du H, et al. (2000): GS FT RG DP Valbuzzi A & Yanofsky C (2001): DB RG Yakhnin AV & Babitzke P (2002): RO |
| rtpA-ycbK | ycbK | SigA | Negative | 277316..277374 | None | AAGTAAAGGAGAAAAGCTGAGCTGAGATGAGAGCAGAAGAGCAGAGTAAGATTCGTGAG |
Sarsero JP, et al. (2000): RG DB DP Yakhnin H, et al. (2006): RG GS FT, toeprint |
| yhaG | yhaG | SigA | Negative | 1075143..1075217 | None | AATGATGAGCATATTATTGGAGGGCAAAAAGCTTAGCAGAGGAGAGCATAGTTATGAAAACAAAAGAGTTAGTCA |
Sarsero JP, et al. (2000): DB RG, RNA dot blot analysis Yakhnin H, et al. (2004): RG DB GS FT |
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