| Factor type | LuxR/UhpA |
|---|---|
| SWISS-PROT | P06534 |
| SubtiList | BG10765 |
| Consensus seq. | TGNCGGAA |
| Comment | a key bi-functional regulator to control developmental transcription activities increases its affinity after phosphorylation (phosphorelay system) spo0F is required for the phosphorylation two-domain structure binding consensus is called 0A box which can be located downstream of the initiation site two adjacent boxes are often found these listed sites might be viewed in its complementary strand |
| Link to | Phylogenetic profile , Weight matrix & Motif alignment |
| Regulated gene |
Operon | Sigma | Regulation | Absolute position | Location | Binding seq.(cis-element) | Exp. | Reference | Year |
|---|---|---|---|---|---|---|---|---|---|
| abrB | ND | ND | Negative | 45172..45199 | +7:+34 | ATTTTGTCGAATAATGACGAAGAAAAAT |
FT | Strauch M, et al. | 1990 |
| argC | argCJBD-carA-carB-argF | ND | Negative | ND | ND | ND |
beta-gal | O'Reilly M,et al. | 1994 |
| dltA | dltABCDE | SigA | Positive | 3951098..3951123 | ND | TTGTCGAAAAAACGGGAAGGGAATTT |
DB FT | Perego M, et al. | 1995 |
| kinA | ND | ND | Negative | ND | ND | ND |
ND | Hoch Two-component signal transduction ASM Press p129-144 | 1995 |
| kinC | ND | SigA | Positive | 1517584..1517613 | -30:-1 | ATTATTTGTCGAAGAATGGTACAATAAGT A |
GS FT | Kobayashi K, et al. | 1995 |
| rbsR | rbsR-rbsK-rbsD-rbsA-rbsC-rbsB | ND | Negative | ND | ND | ND |
beta-gal | O'Reilly M,et al. | 1994 |
| sinI | sinI-sinR | SigA | Positive | 2551546..2551569 | -50:-26 | ACCATTCGACATCATTCTCGTTTTTTTT |
reverse transcriptase extension, FT | Shafikhani, S. H., et al. | 2002 |
| spo0A | ND | SigH | Positive | 2518110..2518123 | -14:+1 | TTTGTCGAATGTAA |
FT | Strauch MA, et al. | 1992 |
| spo0A | ND | ND | Negative | 2518187..2518221 | +38:+72 | AATTTCATTTTTAGTCGAAAAACAGAGAAAAACAT |
FT | Strauch MA, et al. | 1992 |
| spo0A | ND | ND | Negative | 2518239..2518263 | -5:+20 | AAAAGAAGATTTTTCGACAAATTCA |
FT | Strauch MA, et al. | 1992 |
| spo0A | ND | ND | Negative | ND | ND | ND |
ND | Hoch Two-component signal transduction ASM Press p129-144 | 1995 |
| spo0F | ND | SigH | Positive | 3809035..3809072 | -84:-51 | CAAAAGAGAAAATGCTCAGAAAATGTCGTAAAGTAGAC |
DP SDM FT | Strauch MA, et al. | 1993 |
| spo0F | ND | SigH | Positive | 3808936..3808978 | +11:+53 | TTTGACGAAAATCATAATATTGGGGTG TAAAATGATGAATGAA |
DP SDM FT | Strauch MA, et al. | 1993 |
| spoIIAA | ND | SigH | Positive | 2444286..2444301 | -72:-87 | CTTAAATTTTGTCCAG |
FT | Baldus JM, et al. | 1994 |
| spoIIAA | ND | SigH | Positive | 2444227..2444242 | -28:-13 | TCATTCCGTCGAAATC |
FT | Baldus JM, et al. | 1994 |
| spoIIAA | ND | SigH | Positive | 2444266..2444285 | -71:-52 | TAATTATGCCGAATGACCAC |
FT | Baldus JM, et al. | 1994 |
| spoIIAA | ND | SigH | Positive | 2444247..2444265 | -51:-33 | TAGTTTTGTCACGGTGAAG |
FT | Baldus JM, et al. | 1994 |
| spoIIE | ND | SigA | Positive | 70373..70399 | -134:-108 | TTTTCATTTTTAGACAACATTCCGGAA |
SDM FT | York K, et al. | 1992 |
| spoIIE | ND | SigA | Positive | 70404..70420 | -103:-87 | TTTTCATAAACGAATAT |
SDM FT | York K, et al. | 1992 |
| spoIIE | ND | SigA | Positive | 70425..70441 | -82:-66 | GCAGAAACCGTCGAAGA |
SDM FT | York K, et al. | 1992 |
| spoIIE | ND | SigA | Positive | 70459..70479 | -48:-28 | CCTTCTTTTGACAAAATCCTA |
SDM FT | York K, et al. | 1992 |
| spoIIGA | ND | SigA | Positive | 1602931..1602945 | -86:-100 | TTGTCGAGGAAGTAT |
SDM RO FT | Baldus JM, et al. | 1994 |
| spoIIGA | ND | SigA | Positive | 1602946..1602961 | -70:-85 | GGGAAATCTGCTTAAT |
SDM RO FT | Baldus JM, et al. | 1994 |
| spoIIGA | ND | SigA | Positive | 1602990..1603007 | -24:-41 | TGGGAAAGTCTGTCAATT |
SDM RO FT | Baldus JM, et al. | 1994 |
| spoIIGA | ND | SigA | Positive | 1602976..1602993 | -40:-57 | AATTAATGTTGAGAGGAA |
SDM RO FT | Baldus JM, et al. | 1994 |
| yqxM | yqxM-sipW-tasA | SigH | Positive | ND | ND | ND |
Western blot beta-gal |
Stover AG, et al. Stover AG, et al. |
1999 1999 |