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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai |
| Regulated Operon: | abh |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Genus clusters |
|---|---|---|---|---|---|---|
| abh | ylxT, yzaA | + | 1517172..1517450 | transcriptional regulator | COG2002 | abrB-BAC-2 |
| Operon evidence: | Genome analysis |
|---|---|
| Reference: | LeDeaux JR & Grossman AD (1995) |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| SigW | Promoter | -36:+6 | 1517073..1517114 | CGGGAAACTTTTTCAAAGTTTCATTCGTCTACGATATATTGA |
Huang X & Helmann JD (1998): PE Huang X, et al. (1998): RO |
| SigX | Promoter | -40:+2 | 1517073..1517114 | CGGGAAACTTTTTCAAAGTTTCATTCGTCTACGATATATTGA |
Huang X & Helmann JD (1998): PE RG Huang X, et al. (1998): RO |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| AAAAAGGCGGAGTGATATCATCTCCGCCTTTTTTGCGTGCCAA >>>>>>>>> <<<<<<<<<< |
abh |
|