Regulated Operon: abnA

Genes
Genes Synonyms Direction Genome position Function COG ID Genus clusters
abnA
- 2948157..2949098 arabinan-endo 1,5-alpha-L-arabinase COG3507  

Operon evidence: Northern blotting (0.9 kb transcript)
Reference: Raposo MP, et al. (2004)
Comments:

Promoters

Binding
factor		 Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
AraR Negative -48:-20 2949233..2949261 CTATTTTTTTGTCTGTACAAATTACAGCA Raposo MP, et al. (2004): RG PE SDM
SigA Promoter -48:+7 2949207..2949261 CTATTTTTTTGTCTGTACAAATTACAGCATAGTGACTACAATAAAGGGGATACCG Raposo MP, et al. (2004): RG PE

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]		 Downstream of
TGAATAAAAAGCCGGGCTCTGCCCCCGGCTTTTTTTAAAAGAAA
          >>>>>>       <<<<<<
2948102..2948120
37..55
-12.0
 abnA

Overview



Upper Region
Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai