Transcription factor: AraR

Factor type	LacI family
SWISS-PROT	P96711
SubtiList	BG11913
Consensus seq.	ATTTGTACGTACAAAT
Comment	transcriptional regulator (LacI family); negative regulation of the L-arabinose metabolic operon (araABDLMNPQ); alternate gene name: araC, yvbS
Link to	Phylogenetic profile, Weight matrix, Motif alignment & Similar conserved hexameric motifs

Operon	Regulated Gene	Sigma	Regulation	Absolute position	Location	Binding seq.(cis-element)	Experimental evidence
abnA	abnA	SigA	Negative	`2949233..2949261`	`-48:-20`	CTATTTTTTTGTCTGTACAAATTACAGCA	Raposo MP, et al. (2004): RG PE SDM
araABDLMNPQ-abfA	araA	SigA	Negative	`2948032..2948055`	`-7:+17`	TAAAATTGTTCGTACAAAATATTT	Sa Nogueira & Mota LJ (1997): DB HM Mota LJ, et al. (1999): FT
araABDLMNPQ-abfA	araA	SigA	Negative	`2947989..2948009`	`+38:+58`	CATTAGTACGTATCTTTTGTA	Sa Nogueira I & Mota LJ (1997): DB HM Mota LJ, et al. (1999): FT
araE	araE	SigA	Negative	`3484587..3484606`	`-6:+14`	ATATTTGTACGTACTAATTA	Sa Nogueira I & Ramos SS (1997): DB HM Mota LJ, et al. (1999): FT
araE	araE	SigA	Negative	`3484541..3484565`	`+36:+60`	TAATATAAGTACGTACAATTGAAGG	Sa Nogueira I & Ramos SS (1997): DB HM Mota LJ, et al. (1999): FT
araR	araR	SigA	Negative	`3484668..3484687`	`-6:+15`	AAATTTGTCCGTATACATTT	Sa Nogueira I & Mota LJ (1997): DB HM Mota LJ, et al. (1999): FT
xsa	xsa	SigA	Negative	`2914361..2914392`	`-77:-46`	TATAAATACATACGTACAAATATAAAAACAAT	Raposo MP, et al. (2004): RG PE FT
xsa	xsa	SigA	Negative	`2914322..2914353`	`-38:-7`	GTCGTTGACATGTACGAACATATATAATATGG	Raposo MP, et al. (2004): RG PE FT