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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai |
| Regulated Operon: | addBA |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Genus clusters |
|---|---|---|---|---|---|---|
| addB | + | 1135625..1139125 | ATP-dependent deoxyribonuclease (subunit B) | COG3857 | addB-BAC | |
| addA | recE5 | + | 1139112..1142810 | ATP-dependent deoxyribonuclease (subunit A) | COG1074 |
| Operon evidence: | Genome analysis |
|---|---|
| Reference: | Kooistra J & Venema G (1991) |
| Comments: | Terminator stem loop contains four subsequent mismatches. |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| ComK | Positive | -90:-67 | 1135507..1135530 | TGCGGAGATAATCAGCTTTTTATA |
Haijema BJ, et al. (1995): DB OV RG DP GS Hamoen LW, et al. (1998): FT |
| ComK | Positive | -67:-41 | 1135530..1135556 | ATGTGAAAAGGCCGTTTTTACCAATAG |
Haijema BJ, et al. (1995): DB OV RG DP GS Hamoen LW, et al. (1998): FT |
| SigA | Promoter | -48:+20 | 1135549..1135616 | ACCAATAGATCAGATTGGTCATTTTCGTCAACATTCGATAAAATATAGAGAGATAAAAAGAGAGGGGT |
Haijema BJ, et al. (1995): PE |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| TAGCGAGATCCATAAGCTCCGGAATTTCAGGCGGAGCGGGTCTCGTTTTCT >>>>>>>>>>>>>>>>>>> <<<<<<<<<<<<<<< |
addA |
|