 |
Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai |
| Regulated Operon: | ahpCF |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Genus clusters |
|---|---|---|---|---|---|---|
| ahpC | perR | + | 4117974..4118537 | alkyl hydroperoxide reductase (small subunit) | COG0450 | ahpC-BAC ahpC-STA x0088-BAC |
| ahpF | ndh | + | 4118551..4120080 | alkyl hydroperoxide reductase (large subunit) and NADH dehydrogenase | COG3634 | ahpF-BAC ahpF-STA |
| Operon evidence: | Northern blotting (2.4 kb transcript) |
|---|---|
| Reference: | Antelmann H, et al. (1996), BSORF |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| PerR | Negative | -36:+26 | 4117874..4117935 | CTTGACAAAAAATATATATTAATTAATAATTCATATATAATTAGAATTATTATTGAAAGCGA |
Herbig AF, et al. (2001): FT |
| SigA | Promoter | -41:+6 | 4117869..4117915 | TATGGCTTGACAAAAAATATATATTAATTAATAATTCATATATAATT |
Antelmann H, et al. (1996): PE HM |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| AGAAATCCGCTATATTGCCAGATTGGCAGGATAGCGGATTTTTCTTTTTCTAC >>>>>>>>>>>>>>> <<<<<<<<<<<<<<< |
ahpF |
|