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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai |
| Regulated Operon: | alkA |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Genus clusters |
|---|---|---|---|---|---|---|
| alkA | - | 202533..203444 | DNA-3-methyladenine glycosylase | COG0122 | alkA-BAC |
| Operon evidence: | Northern blotting (1.5 kb transcript); upstream and downstream genes are on the opposite strand |
|---|---|
| Reference: | Morohoshi F, et al. (1993), BSORF |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| AdaA | Positive | -58:-13 | 203506..203551 | AGAATGTAATAGCAAGATAACAAAATGAGTAAAGATGATTATGTGA |
Morohoshi F, et al. (1993): FT |
| SigA | Promoter | -47:+18 | 203476..203540 | GCAAGATAACAAAATGAGTAAAGATGATTATGTGATAAACTAATTTCAACCAGCGTGAGTTTTCT |
Morohoshi F, et al. (1993): PE, dinucleotide primer experiment |
|