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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai |
| Regulated Operon: | araR |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Genus clusters |
|---|---|---|---|---|---|---|
| araR | araC, yvbS | + | 3484635..3485789 | transcriptional regulator (LacI family) | COG1609 |
| Operon evidence: | Northern blotting (1.4 kb transcript) |
|---|---|
| Reference: | Sa Nogueira I & Mota LJ (1997), Genbank X98354 |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| AraR | Negative | -6:+15 | 3484668..3484687 | AAATTTGTCCGTATACATTT |
Sa Nogueira I & Mota LJ (1997): DB HM Mota LJ, et al. (1999): FT |
| SigA | Promoter | -40:+6 | 3484634..3484679 | AATGTTTTCTTACAAAGAACGCTGTGATATACTGAAATTTGTCCGT |
Sa Nogueira I & Ramos SS (1997): PE |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| AAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGT >>>>>>>>>>>> <<<<<<<<<<<<< |
araR |
|