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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai |
| Regulated Operon: | arfM |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Genus clusters |
|---|---|---|---|---|---|---|
| arfM | ywiD | - | 3829164..3829640 | probable transcriptional regulator |
| Operon evidence: | Genome analysis |
|---|---|
| Reference: | Presecan E, et al. (1997), Genbank Z97884 |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| FNR | Positive | -52:-29 | 3829694..3829717 | AGGCTGTGAAATACATCACTGCTG |
Marino M, et al. (2001): RG SDM DB Cruz Ramos H, et al. (1995): HM Reents H, et al. (2006): AR |
| SigA | Promoter | -52:+7 | 3829659..3829717 | AGGCTGTGAAATACATCACTGCTGTACAGGCTCAGTCGAGCTACACTAAAGCTATCCTT |
Cruz Ramos H, et al. (1995): PE Marino M, et al. (2001): PE |
| ArfM | Negative | ND | ND | ND |
Marino M, et al. (2001): RG DB |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| TGAGCCCGGTTCTTAAATAGAGCCGGTTTTTTTTGATCTTT >>>>>>>> <<<<<<<< |
arfM |
|