Regulated Operon: clpE

Genes
Genes Synonyms Direction Genome position Function COG ID Genus clusters
clpE ykvH - 1434936..1437035 ATP-dependent Clp protease-like (class III stress gene) COG0542 clpE-STR  

Operon evidence: Genome analysis
Reference: Derre I, et al. (1999)
Comments:

Promoters

Binding
factor		 Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
CtsR Negative -33:-9 1437244..1437267 AAAGTCAAAGATAGTCAGAGTATA Derre I, et al. (1999): GS FT
CtsR Negative -5:+20 1437216..1437240 TTAATCAAAGTTGGTCAAACAAACC Derre I, et al. (1999): GS FT
CtsR Negative +40:+63 1437173..1437196 TTGGTCAAAGATAGTCAAATATTC Derre I, et al. (1999): GS FT
CtsR Negative -5:+19 1437098..1437121 ATAGTCAAAGAAGGTCAAACCCAA Derre I, et al. (1999): GS FT
CtsR Negative +42:+66 1437051..1437075 TTGGTCAAAGATGATCAAATTATTA Derre I, et al. (1999): GS FT
SigA Promoter -39:+5 1437231..1437274 AGACTTGAAAGTCAAAGATAGTCAGAGTATACTATTAATCAAAG Derre I, et al. (1999): PE
SigA Promoter -38:+5 1437112..1437154 TGGTTTGAATGCCGTTAAGTTTGCCGTATACTAATAGTCAAAG Derre I, et al. (1999): PE

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]		 Downstream of
AATCAGCGGTTTCCTTTTAGGAAGCCGCTTTTTTTTATACTTT
     >>>>>>>>>>   <<<<<<<<<<
1434907..1434929
7..29
-17.7
 clpE

Overview



Upper Region
Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai