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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai |
| Regulated Operon: | clpX |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Genus clusters |
|---|---|---|---|---|---|---|
| clpX | - | 2883846..2885108 | ATP-dependent Clp protease ATP-binding subunit (class III heat-shock protein) | COG1219 | clpX-BAC clpX-STA clpX-STR |
| Operon evidence: | Northern blotting (1.4 kb transcript) |
|---|---|
| Reference: | Gerth U, et al. (1996), Serrano M, et al. (2001), Liu J, et al. (1999) |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| CtsR | Negative | ND | ND | ND |
Kruger E, et al. (1998): DB |
| SigA | Promoter | -46:+4 | 2885184..2885233 | AACACATTGTTACCGTCTTTTTGGAAAGTATGGTAAAATGCAATACATAC |
Gerth U, et al. (1998): PE |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| ACAAACCTCCTGAGTGGTAACACTCAGGAGGTTTTTTTGCATGCAA >>>>>>>>>>> <<<<<<<<<<< |
clpX |
|