Regulated Operon: comGABCDEFG-yqzE

Genes
Genes Synonyms Direction Genome position Function COG ID Genus clusters
comGA
- 2558240..2559310
COG2804 comYA-STR  
comGB
- 2557216..2558187 probably part of the DNA transport machinery COG1459  
comGC
- 2556906..2557202
COG4537 comGC-STA  
comGD
- 2556485..2556916 probably part of the DNA transport machinery COG2165  
comGE
- 2556154..2556501 probably part of the DNA transport machinery
 
comGF
- 2555745..2556128 probably part of the DNA transport machinery COG4940  
comGG
- 2555370..2555744 probably part of the DNA transport machinery
 
yqzE
- 2555060..2555299

 

Operon evidence: S1 nuclease mapping; Northern blotting (5.0 kb transcript)
Reference: Albano M, et al. (1989), Albano M & Dubnau DA (1989)
Comments:

Promoters

Binding
factor		 Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
ComK Positive -104:-69 2559398..2559433 TCTTTTTTCTTGCCAGAAAGAATTGGTTTTTCAGCA Guillen N, et al. (1989): DB RG
Roggiani M, et al. (1990): RG DB
Kong L, et al. (1993): RG DB
Kong L & Dubnau D (1994): RG DB
Van Sinderen D, et al. (1994): DB RG
Van Sinderen D, et al. (1995): GS RG OV
Msadek T, et al. (1995): Two-Component Signal Transduction, pp. 447-471: DB RG
Hahn J, et al. (1996): DB OV RG
Hamoen LW, et al. (1998): FT
Berka RM, et al. (2002): AR HM
ComK Positive -69:-32 2559361..2559398 ATATAACATCTCACAAAATCACGTTTTCCCTGTTTGAT Guillen N, et al. (1989): DB RG
Roggiani M, et al. (1990): RG DB
Kong L, et al. (1993): RG DB
Kong L & Dubnau D (1994): RG DB
Van Sinderen D, et al. (1994): DB RG
Van Sinderen D, et al. (1995): GS RG OV
Msadek T, et al. (1995): Two-Component Signal Transduction, pp. 447-471: DB RG
Hahn J, et al. (1996): DB OV RG
Hamoen LW, et al. (1998): FT
Berka RM, et al. (2002): AR HM
ComZ Negative ND ND ND Ogura M & Tanaka T (2000): DB RG
SigA Promoter -49:+17 2559313..2559378 ACGTTTTCCCTGTTTGATTACCTTTTCTTCTTTTTCTACAATATGCGTTGAAAGGAGAGGGAATCA Albano M, et al. (1989): PE

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]		 Downstream of
GAACAGTACCTGTGCGAGCGGGTACCTTTTTTTTGCTTCTT
     >>>>>>>>    <<<<<<<<
2554891..2554910
150..169
-16.1
 yqzE

Overview



Upper Region
Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai