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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai |
| Regulated Operon: | cotC |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Genus clusters |
|---|---|---|---|---|---|---|
| cotC | - | 1904204..1904560 | spore coat protein (outer) |
| Operon evidence: | Genome analysis |
|---|---|
| Reference: | |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| GerE | Positive | -141:-126 | 1904556..1904571 | CGTTTGGGCCGATGAA |
Zheng L, et al. (1992): GS FT RO |
| GerE | Positive | -77:-56 | 1904486..1904507 | ATCATTTGGACAGCCCTTTTTT |
Zheng L, et al. (1992): GS FT RO |
| SigK | Promoter | -41:+6 | 1904425..1904471 | AACTGTCCAAGCCGCAAAATCTACTCGCCGTATAATAAAGCGTAGTA |
Zheng L, et al. (1992): PE Zheng LB & Losick R (1990): PE RG DP |
| SpoIIID | Negative | -86:-16 | 1904446..1904516 | TCTTTTTCTATCATTTGGACAGCCCTTTTTTCCTTCTATGATTTTAACTGTCCAAGCCGCAAAATCTACTC |
Ichikawa H, et al. (2000): GS FT |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| TTTCCCCCGGCTATTGCCGGGTCTTTTTTGTTTGTGCA >>>>>> <<<<<< |
cotC |
|