Transcription factor: SpoIIID

Factor type	Unique (DeoR family)
SWISS-PROT	P15281
SubtiList	BG10408
Consensus seq.	WWRRACAR-Y
Comment	A bi-functional transcription factor which regulates temporal expression of many genes in the mother cell as well as GerE
Link to	Phylogenetic profile, Weight matrix, Motif alignment & Similar conserved hexameric motifs

Operon	Regulated Gene	Sigma	Regulation	Absolute position	Location	Binding seq.(cis-element)	Experimental evidence
asnO	asnO	SigE	Positive	ND	ND	ND	Eichenberger P, et al. (2004): GS AR
bofA	bofA	SigE	Negative	`29725..29754`	`-17:+13`	TCTCATAAGCTTGTACTAGAACAAGCGAAG	Ireton K & Grossman AD (1992): RG DB Halberg R, et al. (1994): FT RO Eichenberger P, et al. (2004): GS AR
bofA	bofA	SigE	Negative	`29795..29815`	`+54:+74`	TTATTTTAGGACTGGTTATTC	Ireton K & Grossman AD (1992): RG DB Halberg R, et al. (1994): FT RO Eichenberger P, et al. (2004): GS AR
cotA	cotA	SigK	Negative	ND	ND	ND	Halberg R, et al. (1995): RO
cotC	cotC	SigK	Negative	`1904446..1904516`	`-86:-16`	TCTTTTTCTATCATTTGGACAGCCCTTTTTTCCTTCTATGATTTTAACTGTCCAAGCCGCAAAATCTACTC	Ichikawa H, et al. (2000): GS FT
cotD	cotD	SigK	Negative	`2332298..2332318`	`-79:-59`	AAAGACAGCTTAATTGCACAC	Halberg R, et al. (1994): FT RO
cotD	cotD	SigK	Negative	`2332260..2332279`	`-40:-21`	CATCAGAACATGTACCCCTT	Halberg R, et al. (1994): FT RO
cotD	cotD	SigK	Negative	`2332161..2332186`	`+54:+79`	TGATGGCGCCAATTGTCCATCCTACT	Halberg R, et al. (1994): FT RO
cotF	cotF	SigK	Positive	ND	ND	ND	Eichenberger P, et al. (2004): GS AR
cotJABC-yesJK	cotJA	SigE	Positive	`755166..755195`	`-48:-19`	AAGTCGTGTTTTAGTCATAATCATGCCTCC	Henriques AO, et al. (1995): DB RG
cotT	cotT	SigK	Positive	ND	ND	ND	Eichenberger P, et al. (2004): GS AR
cotVWX	cotX	SigK	Negative	`1250513..1250542`	`-35:-7`	AGTCAAAATAAGAGGCTCGCTCATTTAATA	Ichikawa H, et al. (2000): GS FT
gerE	gerE	SigK	Positive	ND	ND	ND	Halberg R, et al. (1995): RO
gerM	gerM	SigE	Negative	ND	ND	ND	Eichenberger P, et al. (2004): GS AR
spoIID	spoIID	SigE	Negative	`3776807..3776867`	`-60:+1`	ATAAAGTTTCTGTCCAAAACGAGAGTCATATTAGCTTGTCCCTGCCCATAGACTAGACTAG	Eichenberger P, et al. (2004): FT GS AR
yqhV-spoIIIAABCDEFGH	spoIIIAA	SigE	Negative	`2536875..2536929`	`-54:+1`	CATAAATAAAGAGAGGCTTGTCATAAAGTCTGCCTCACATCATACATTTTAAAGA	Eichenberger P, et al. (2004): FT AR
spoIVA	spoIVA	SigE	Negative	ND	ND	ND	Eichenberger P, et al. (2004): GS AR
spoIVCA	spoIVCA	SigE	Positive	`2654223..2654256`	`-47:-12`	TTAAAATCTCCTCATTTGGACAAACAGCTGTTAC	Halberg R, et al. (1994): FT RO Eichenberger P, et al. (2004): GS AR
spoIVCA	spoIVCA	SigE	Positive	`2654057..2654074`	`+137:+154`	CGACCGAGGAACAAGCGA	Halberg R, et al. (1994): FT RO Eichenberger P, et al. (2004): GS AR
spoIVCB-spoIIIC	spoIVCB	SigE	Positive	`2652144..2652164`	`-36:-16`	TACAGACACAGACAGCCTCCC	Halberg R, et al. (1994): FT RO
spoIVCB-spoIIIC	spoIVCB	SigE	Positive	`2652257..2652279`	`+78:+100`	TAAAGAGCTTGTCTTTTTAGTAT	Halberg R, et al. (1994): FT RO
spoIVCB-spoIIIC	spoIVCB	SigE	Positive	`2652288..2652312`	`+109:+133`	AAAAACAATGCCTTTCCACAACCGC	Halberg R, et al. (1994): FT RO
spoIVFAB	spoIVFA	SigE	Negative	ND	ND	ND	Eichenberger P, et al. (2004): GS AR
spoVB	spoVB	SigE	Negative	ND	ND	ND	Eichenberger P, et al. (2004): GS AR
spoVD	spoVD	SigE	Negative	`1583457..1583475`	`-33:-21`	TTCTACCTGTCCAAATTCA	Zhang B, et al. (1997): RO FT GS
spoVD	spoVD	SigE	Negative	`1583481..1583497`	`-9:+8`	AAAATGAAACAAGCCTA	Zhang B, et al. (1997): RO FT GS
murE-mraY-murD-spoVE-murG-murB-divIB-ylxWX-sbp	spoVE	SigE	Negative	`1589381..1589439`	`-38:+21`	GGGAATACAACATGTCAAACGTGTCGATAATGTTGAACAAGCAGTATCTGCGGCGTTTG	Eichenberger P, et al. (2004): FT AR
murE-mraY-murD-spoVE-murG-murB-divIB-ylxWX-sbp	spoVE	SigE	Negative	`1589520..1589578`	`-38:+21`	GGTGACATGTTTATAGATGCCGTGCATATGCTTAAGTAAGGGCTTGTCTTGAAGTAAAT	Eichenberger P, et al. (2004): FT AR
spoVK	spoVK	SigE	Positive	ND	ND	ND	Eichenberger P, et al. (2004): GS AR
spoVM	spoVM	SigE	Positive	ND	ND	ND	Levin PA, et al. (1993): DB RG
yabMNOPQ-divIC-yabR	yabP	SigE	Negative	ND	ND	ND	Eichenberger P, et al. (2004): GS AR
ybaN	ybaN	SigE	Negative	ND	ND	ND	Eichenberger P, et al. (2004): GS AR
ycgFG	ycgF	SigE	Negative	ND	ND	ND	Eichenberger P, et al. (2004): GS AR
yitE	yitE	SigE (?)	Negative	ND	ND	ND	Eichenberger P, et al. (2004): GS AR
ykvUV	ykvU	SigE	Negative	ND	ND	ND	Eichenberger P, et al. (2004): GS AR
ylbJ	ylbJ	SigE	Negative	ND	ND	ND	Eichenberger P, et al. (2004): GS AR
ypjB	ypjB	SigE	Negative	ND	ND	ND	Eichenberger P, et al. (2004): GS AR
yqfCD	yqfC	SigE	Negative	ND	ND	ND	Eichenberger P, et al. (2004): GS AR
yqfZY	yqfZ	SigE	Negative	ND	ND	ND	Eichenberger P, et al. (2004): GS AR