Transcription factor: SpoIIID

Factor type Unique (DeoR family)
SWISS-PROT P15281
SubtiList BG10408
Consensus seq. WWRRACAR-Y
Comment A bi-functional transcription factor which regulates temporal expression of many genes in the mother cell as well as GerE
Link to Phylogenetic profile, Weight matrix, Motif alignment & Similar conserved hexameric motifs

Operon Regulated Gene Sigma Regulation Absolute position Location Binding seq.(cis-element) Experimental evidence
asnO asnO SigE Positive ND ND ND Eichenberger P, et al. (2004): GS AR
bofA bofA SigE Negative 29725..29754 -17:+13 TCTCATAAGCTTGTACTAGAACAAGCGAAG Ireton K & Grossman AD (1992): RG DB
Halberg R, et al. (1994): FT RO
Eichenberger P, et al. (2004): GS AR
bofA bofA SigE Negative 29795..29815 +54:+74 TTATTTTAGGACTGGTTATTC Ireton K & Grossman AD (1992): RG DB
Halberg R, et al. (1994): FT RO
Eichenberger P, et al. (2004): GS AR
cotA cotA SigK Negative ND ND ND Halberg R, et al. (1995): RO
cotC cotC SigK Negative 1904446..1904516 -86:-16 TCTTTTTCTATCATTTGGACAGCCCTTTTTTCCTTCTATGATTTTAACTGTCCAAGCCGCAAAATCTACTC Ichikawa H, et al. (2000): GS FT
cotD cotD SigK Negative 2332298..2332318 -79:-59 AAAGACAGCTTAATTGCACAC Halberg R, et al. (1994): FT RO
cotD cotD SigK Negative 2332260..2332279 -40:-21 CATCAGAACATGTACCCCTT Halberg R, et al. (1994): FT RO
cotD cotD SigK Negative 2332161..2332186 +54:+79 TGATGGCGCCAATTGTCCATCCTACT Halberg R, et al. (1994): FT RO
cotF cotF SigK Positive ND ND ND Eichenberger P, et al. (2004): GS AR
cotJABC-yesJK cotJA SigE Positive 755166..755195 -48:-19 AAGTCGTGTTTTAGTCATAATCATGCCTCC Henriques AO, et al. (1995): DB RG
cotT cotT SigK Positive ND ND ND Eichenberger P, et al. (2004): GS AR
cotVWX cotX SigK Negative 1250513..1250542 -35:-7 AGTCAAAATAAGAGGCTCGCTCATTTAATA Ichikawa H, et al. (2000): GS FT
gerE gerE SigK Positive ND ND ND Halberg R, et al. (1995): RO
gerM gerM SigE Negative ND ND ND Eichenberger P, et al. (2004): GS AR
spoIID spoIID SigE Negative 3776807..3776867 -60:+1 ATAAAGTTTCTGTCCAAAACGAGAGTCATATTAGCTTGTCCCTGCCCATAGACTAGACTAG Eichenberger P, et al. (2004): FT GS AR
yqhV-spoIIIAABCDEFGH spoIIIAA SigE Negative 2536875..2536929 -54:+1 CATAAATAAAGAGAGGCTTGTCATAAAGTCTGCCTCACATCATACATTTTAAAGA Eichenberger P, et al. (2004): FT AR
spoIVA spoIVA SigE Negative ND ND ND Eichenberger P, et al. (2004): GS AR
spoIVCA spoIVCA SigE Positive 2654223..2654256 -47:-12 TTAAAATCTCCTCATTTGGACAAACAGCTGTTAC Halberg R, et al. (1994): FT RO
Eichenberger P, et al. (2004): GS AR
spoIVCA spoIVCA SigE Positive 2654057..2654074 +137:+154 CGACCGAGGAACAAGCGA Halberg R, et al. (1994): FT RO
Eichenberger P, et al. (2004): GS AR
spoIVCB-spoIIIC spoIVCB SigE Positive 2652144..2652164 -36:-16 TACAGACACAGACAGCCTCCC Halberg R, et al. (1994): FT RO
spoIVCB-spoIIIC spoIVCB SigE Positive 2652257..2652279 +78:+100 TAAAGAGCTTGTCTTTTTAGTAT Halberg R, et al. (1994): FT RO
spoIVCB-spoIIIC spoIVCB SigE Positive 2652288..2652312 +109:+133 AAAAACAATGCCTTTCCACAACCGC Halberg R, et al. (1994): FT RO
spoIVFAB spoIVFA SigE Negative ND ND ND Eichenberger P, et al. (2004): GS AR
spoVB spoVB SigE Negative ND ND ND Eichenberger P, et al. (2004): GS AR
spoVD spoVD SigE Negative 1583457..1583475 -33:-21 TTCTACCTGTCCAAATTCA Zhang B, et al. (1997): RO FT GS
spoVD spoVD SigE Negative 1583481..1583497 -9:+8 AAAATGAAACAAGCCTA Zhang B, et al. (1997): RO FT GS
murE-mraY-murD-spoVE-murG-murB-divIB-ylxWX-sbp spoVE SigE Negative 1589381..1589439 -38:+21 GGGAATACAACATGTCAAACGTGTCGATAATGTTGAACAAGCAGTATCTGCGGCGTTTG Eichenberger P, et al. (2004): FT AR
murE-mraY-murD-spoVE-murG-murB-divIB-ylxWX-sbp spoVE SigE Negative 1589520..1589578 -38:+21 GGTGACATGTTTATAGATGCCGTGCATATGCTTAAGTAAGGGCTTGTCTTGAAGTAAAT Eichenberger P, et al. (2004): FT AR
spoVK spoVK SigE Positive ND ND ND Eichenberger P, et al. (2004): GS AR
spoVM spoVM SigE Positive ND ND ND Levin PA, et al. (1993): DB RG
yabMNOPQ-divIC-yabR yabP SigE Negative ND ND ND Eichenberger P, et al. (2004): GS AR
ybaN ybaN SigE Negative ND ND ND Eichenberger P, et al. (2004): GS AR
ycgFG ycgF SigE Negative ND ND ND Eichenberger P, et al. (2004): GS AR
yitE yitE SigE (?) Negative ND ND ND Eichenberger P, et al. (2004): GS AR
ykvUV ykvU SigE Negative ND ND ND Eichenberger P, et al. (2004): GS AR
ylbJ ylbJ SigE Negative ND ND ND Eichenberger P, et al. (2004): GS AR
ypjB ypjB SigE Negative ND ND ND Eichenberger P, et al. (2004): GS AR
yqfCD yqfC SigE Negative ND ND ND Eichenberger P, et al. (2004): GS AR
yqfZY yqfZ SigE Negative ND ND ND Eichenberger P, et al. (2004): GS AR




Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai