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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai |
| Regulated Operon: | cotD |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Genus clusters |
|---|---|---|---|---|---|---|
| cotD | - | 2331981..2332208 | spore coat protein (inner) | x0836-BAC |
| Operon evidence: | experimental |
|---|---|
| Reference: | Genbank L47383 |
| Comments: | Genbank L47838 lists experimental evidence for this terminator, but does not specify the evidence further. |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| GerE | Pos/Neg | -63:-32 | 2332271..2332302 | CACACTTTTAAAATAGGTCTTTGCATCAGAAC |
Ichikawa H, et al. (1999): FT |
| GerE | Pos/Neg | -41:-10 | 2332249..2332280 | GCATCAGAACATGTACCCCTTATTTTTCATAA |
Ichikawa H, et al. (1999): FT |
| SigK | Promoter | -43:+5 | 2332235..2332282 | TTGCATCAGAACATGTACCCCTTATTTTTCATAACTTAGTATTGTAAT |
Zheng LB & Losick R (1990): S1 RG |
| SpoIIID | Negative | -79:-59 | 2332298..2332318 | AAAGACAGCTTAATTGCACAC |
Halberg R, et al. (1994): FT RO |
| SpoIIID | Negative | -40:-21 | 2332260..2332279 | CATCAGAACATGTACCCCTT |
Halberg R, et al. (1994): FT RO |
| SpoIIID | Negative | +54:+79 | 2332161..2332186 | TGATGGCGCCAATTGTCCATCCTACT |
Halberg R, et al. (1994): FT RO |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| ACAAATGGGGCCCACGGGAGCCCCATTTTTTAAAGCAGGT >>>>>>>> <<<<<<<<< |
cotD |
|