Regulated Operon: cspB

Genes
Genes Synonyms Direction Genome position Function COG ID Genus clusters
cspB
- 983599..983802 major cold-shock protein COG1278 cspD-BAC cspD-LIS cspD-OCB cspD-STA-2  

Operon evidence: Genome analysis
Reference: Willimsky G, et al. (1992)
Comments:

Promoters

Binding
factor		 Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
ComK Unknown Downstream of cspB 983511..983544 AAAAAGCTGTTTTGCATAAGCAAAACAGCTTTTT Hamoen LW, et al. (1998): GS DP
SigA Promoter -50:+18 983904..983971 AATTTCAATAAGCAGTTGTTTTTTCTGAAGATTACTGGTAGAGTAAAGGTAATTATTTTTGTTCGAAC Willimsky G, et al. (1992): PE

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]		 Downstream of
AAAAACTGCAGGTGCAAACCTGCAGTTTTTATTTTGACAA
     >>>>>>>>    <<<<<<<<
983559..983578
21..40
-17.5
 cspB
ACAAAAAAGCTGTTTTGCATAAGCAAAACAGCTTTTTTTATTAGTTT
        >>>>>>>>>>    <<<<<<<<<<
983516..983539
60..83
-16.9
 cspB

Overview



Upper Region
Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai