 |
Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai |
| Regulated Operon: | dltABCDE |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Genus clusters |
|---|---|---|---|---|---|---|
| dltA | ipa-5r, dae | + | 3951296..3952807 | D-alanyl-D-alanine carrier protein ligase (Dcl) | COG1020 | dltA-BAC dltA-STA |
| dltB | ipa-4r | + | 3952804..3953991 | COG1696 | ||
| dltC | ipa-3r | + | 3954008..3954244 | D-alanyl carrier protein (Dcp) | COG0236 | dltC-BAC dltC-LAB dltC-STA dltC-STR |
| dltD | ipa-2r | + | 3954244..3955422 | COG3966 | x0213-BAC | |
| dltE | ipa-1r | + | 3955513..3956271 | COG3967 |
| Operon evidence: | Northern blotting (5.0 kb transcript) |
|---|---|
| Reference: | Perego M, et al. (1995), Serizawa M, et al. (2005) |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| SigD | Promoter | ND | 3950996..3951043 | ATAAAGATTCATTTTCAAAAACATACGCCGATATATTAATTTGAGGGA |
Perego M, et al. (1995): DB RG |
| SigX | Promoter | -38:+12 | 3951054..3951103 | AAAATGAAACTTTTTGAGCATCTGATCGTCAAATAATCATGTGATTGTCG |
Cao M & Helmann JD (2004): ROMA RG PE |
| Spo0A | Positive | +1:+21 | 3951092..3951112 | ATGTGATTGTCGAAAAAACGG |
Perego M, et al. (1995): DB FT |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| AACACGCAGGAGAATTAATTTCTCCTGCTTTTTTCATATGAAT >>>>>>>>> <<<<<<<<< |
dltE |
|