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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai |
| Regulated Operon: | hbs |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Genus clusters |
|---|---|---|---|---|---|---|
| hbs | dbpA | - | 2384740..2385018 | non-specific DNA-binding protein HBsu; signal recognition particle-like (SRP) component | COG0776 | hbs-BAC |
| Operon evidence: | Northern blotting (0.38 kb and 0.54 kb transcripts) |
|---|---|
| Reference: | Micka B, et al. (1991), Micka B & Marahiel MA (1992) |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| LexA | Negative | ND | 2385280..2385303 | AAAAAGGAATATTCGTTCGGTAAA |
Au N, et al. (2005): GS |
| Hbs | Negative | ND | ND | ND |
Fernandez S & Alonso JC (1999): PE OV GS |
| SigA | Promoter | -40:+18 | 2385182..2385239 | AATGCTTGATATGGCTTTTTATATGTGTTACTCTACATACAGAAATTCTTCACTTTGT |
Micka B, et al. (1991): PE NB Micka B & Marahiel MA (1992): PE NB Fernandez S & Alonso JC (1999): RG PE |
| SigA | Promoter | -43:+11 | 2385221..2385273 | TAAATCCTTGACGAGCAAGGGATTGACGCTTTAAAATGCTTGATATGGCTTTT |
Fernandez S & Alonso JC (1999): RG PE |
| SigH | Promoter | -50:+7 | 2385033..2385089 | GAATCAGACTGAACTGTGAAGAAATGATAATAAACGAACTGAATGTATCCTTTTGGG |
Micka B, et al. (1991): PE Micka B & Marahiel MA (1992): PE NB Fernandez S & Alonso JC (1999): RG |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| GAAAAGCCCCTTTCTAAGGGGCTTTTCATATTTCAAG >>>>>>> <<<<<<< |
hbs |
|