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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai |
| Regulated Operon: | kdgRKAT |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Genus clusters |
|---|---|---|---|---|---|---|
| kdgR | - | 2323810..2324829 | transcriptional regulator (LacI family) | COG1609 | ||
| kdgK | - | 2322798..2323772 | 2-keto-3-deoxygluconate kinase | COG0524 | ||
| kdgA | - | 2322206..2322796 | 2-keto-3-deoxygluconate-6-phosphate aldolase | COG0800 | ||
| kdgT | - | 2321169..2322161 | 2-keto-3-deoxygluconate permease |
| Operon evidence: | Northern blotting (3.7 kb transcript) |
|---|---|
| Reference: | Pujic P, et al. (1998) |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| KdgR | Negative | ND | ND | ND |
Pujic P, et al. (1998): NB RG DB |
| SigA | Promoter | -43:+5 | 2324875..2324922 | AAAAAACTCTTCCCAAATTTTAAAATTATGGTATTCTTTTGTTGTAAC |
Pujic P, et al. (1998): PE |
| CcpA | Negative | ND | 2322423..2322445 | ATTATGGAAGCGCTGACATTCGG |
Miwa Y, et al. (2000): RG |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| AAAAAGGCTGCCACAAAACATACCGGCAGCCTTTTATACAAACAAT >>>>>>> <<<<<<< |
kdgT |
|