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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai |
| Regulated Operon: | licBCAH |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Genus clusters |
|---|---|---|---|---|---|---|
| licB | celA | - | 3960587..3960895 | phosphotransferase system (PTS) lichenan-specific enzyme IIB component | COG1440 | x0802-BAC |
| licC | celB | - | 3959213..3960571 | phosphotransferase system (PTS) lichenan-specific enzyme IIC component | COG1455 | licC-BAC x1227-BAC x1295-BAC |
| licA | celC | - | 3958862..3959194 | phosphotransferase system (PTS) lichenan-specific enzyme IIA component | COG1447 | celC-BAC |
| licH | celD, celF | - | 3957537..3958865 | 6-phospho-beta-glucosidase | COG1486 |
| Operon evidence: | Northern blotting (3.4 kb transcript) |
|---|---|
| Reference: | Tobisch S, et al. (1997), Genbank Z49992 |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| CcpA | Negative | -40:+6 | 3960937..3960982 | CTGAGTGTTTATGAAAGCGATTTCATAATATGATGATAGCAACAGC |
Tobisch S, et al. (1999): RG Tobisch S, et al. (1997): HM |
| LicR | Positive | ND | ND | ND |
Tobisch S, et al. (1999): RG Tobisch S, et al. (1997): RG DB |
| SigA | Promoter | -40:+6 | 3960937..3960982 | CTGAGTGTTTATGAAAGCGATTTCATAATATGATGATAGCAACAGC |
Tobisch S, et al. (1997): PE NB |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| AAAAAGCCGGCCTGTAATGGGCCGGCTTTTTTCTTACTTGC >>>>>>>> <<<<<<<< |
licH |
|