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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai |
| Regulated Operon: | lytR |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Genus clusters |
|---|---|---|---|---|---|---|
| lytR | + | 3662311..3663231 | membrane-bound protein | COG1316 | x0089-BAC |
| Operon evidence: | Genome analysis |
|---|---|
| Reference: | Lazarevic V, et al. (1992), Genbank M87645 |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| LytR | Negative | ND | ND | ND |
Lazarevic V (1992): DB |
| SigA | Promoter | -39:+5 | 3662248..3662291 | AGAGTTGTATTTATTGGAAATTTAACTCATAATGAAAGTAATTT |
Lazarevic V, et al. (1992): PE Huang X & Helmann JD (1998): RG PE RO |
| SigX | Promoter | -36:+6 | 3662191..3662232 | AATGAAACTTTTTTTTATAAAAAACGACTATTTTAGGATTTC |
Huang X & Helmann JD (1998): DB RG PE Lazarevic V, et al. (1992): PE |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| AAAAAGAAGCTTCGCACAATGTGCAAAGCTTCTTTTTTATTTGCCTG >>>>>>>>>>>> <<<<<<<<<<<< |
lytR |
|