Regulated Operon: pbpE-racX

Genes
Genes Synonyms Direction Genome position Function COG ID Genus clusters
pbpE
- 3533148..3534503 penicillin-binding protein 4* COG1680  
racX
- 3532449..3533132 amino acid racemase COG1794  

Operon evidence: mutational analysis
Reference: Popham DL & Setlow P (1993)
Comments:


Promoters

Binding
factor
Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
AbrB Negative -84:-60 3534576..3534600 ATGTGATGGGTTAAAAAGGATCTCT Strauch MA, et al. (1995): FT
AbrB Negative -52:-27 3534543..3534568 GGATTTTTCAAAATATTTGAAACGTT Strauch MA, et al. (1995): FT
SigW Promoter -40:+3 3534514..3534556 ATATTTGAAACGTTAGTAGGTTAGTAACGTACAGAGATATGGG Huang X, et al. (1999): S1 DB RG
Popham DL, et al. (1993): PE
Cao M, et al. (2002): AR

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]
Downstream of
TCAGACAAGGACTGTCTTCAAACAGTCCTTGTTTTTTTATGTTCCT
     >>>>>>>>>>      <<<<<<<<<<
3532416..3532441
8..33
-17.0
racX

Overview



Upper Region






Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai