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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai |
| Regulated Operon: | pbpE-racX |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Genus clusters |
|---|---|---|---|---|---|---|
| pbpE | - | 3533148..3534503 | penicillin-binding protein 4* | COG1680 | ||
| racX | - | 3532449..3533132 | amino acid racemase | COG1794 |
| Operon evidence: | mutational analysis |
|---|---|
| Reference: | Popham DL & Setlow P (1993) |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| AbrB | Negative | -84:-60 | 3534576..3534600 | ATGTGATGGGTTAAAAAGGATCTCT |
Strauch MA, et al. (1995): FT |
| AbrB | Negative | -52:-27 | 3534543..3534568 | GGATTTTTCAAAATATTTGAAACGTT |
Strauch MA, et al. (1995): FT |
| SigW | Promoter | -40:+3 | 3534514..3534556 | ATATTTGAAACGTTAGTAGGTTAGTAACGTACAGAGATATGGG |
Huang X, et al. (1999): S1 DB RG Popham DL, et al. (1993): PE Cao M, et al. (2002): AR |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| TCAGACAAGGACTGTCTTCAAACAGTCCTTGTTTTTTTATGTTCCT >>>>>>>>>> <<<<<<<<<< |
racX |
|