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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai |
| Regulated Operon: | pel |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Genus clusters |
|---|---|---|---|---|---|---|
| pel | + | 827330..828592 | pectate lyase | COG3866 |
| Operon evidence: | Northern blotting (1.3 kb transcript) |
|---|---|
| Reference: | Nasser W, et al. (1993), Yoshida K, et al. (2003) |
| Comments: | Northern blotting results in BSORF also show a pel-yflS trancript. |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| ComA | Positive | ND | 827206..827221 | TTGCAGAATGCCGCAA |
Comella N & Grossman AD (2005): DB AR OV RG |
| TnrA | Negative | ND | 827287..827303 | TGGAATAAAATCTCACA |
Yoshida K, et al. (2003): AR HM GS |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| AAAAACACAAAGGGTGCTAACCTTTGTGTTTTTTAATTAATTA >>>>>>>> <<<<<<<< |
pel |
|