Regulated Operon: pta

Genes
Genes Synonyms Direction Genome position Function COG ID Genus clusters
pta ipa-88d, ywfJ - 3864377..3865348 phosphotransacetylase COG0280 pta-BAC pta-CLO pta-STA  

Operon evidence: Genome analysis
Reference: Shin BS, et al. (1999)
Comments:

Promoters

Binding
factor		 Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
CcpA Negative -70:-35 3865420..3865454 TTTTTTATGAAAGCGCTATAATGAAAGTTGGCTGT Presecan-Siedel E, et al. (1999): FT
CcpA Negative -11:+29 3865357..3865396 ATGCTAGTAAAAGAAAGCGTTTTTGTAACTTTTTGAGGAG Presecan-Siedel E, et al. (1999): FT
SigA Promoter -38:+5 3865381..3865423 CTGTTTGAATTTGATTGGAAGAAGAGTATGCTAGTAAAAGAAA Shin BS, et al. (1999): PE

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]		 Downstream of
ACAATGGCAGCTCTCGACCGAGGGCTGCCTTTTTTGCGCTTCTG
     >>>>>>>>>>    <<<<<<<<<<
3864337..3864360
17..40
-21.0
 pta

Overview



Upper Region
Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai