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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai |
| Regulated Operon: | pucABCDE |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Genus clusters |
|---|---|---|---|---|---|---|
| pucA | yurF | - | 3338972..3339964 | xanthine dehydrogenase | COG1975 | |
| pucB | yurE | - | 3338382..3338975 | xanthine dehydrogenase | COG2068 | |
| pucC | yurD | - | 3337527..3338360 | xanthine dehydrogenase | COG1319 | |
| pucD | yurC | - | 3335289..3337526 | xanthine dehydrogenase | COG1529 | |
| pucE | yurB | - | 3334777..3335298 | xanthine dehydrogenase | COG2080 |
| Operon evidence: | Northern blotting (5.3 kb transcript) |
|---|---|
| Reference: | Yoshida K, et al. (2003) |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| PucR | Negative | ND | ND | ND |
Beier L, et al. (2001): DB |
| SigA | Promoter | -40:+7 | 3340079..3340125 | CTTCGTTTGACTCTTTTTACAAATCCTCTTTCTATGTGTTTCATTTT |
Beier L, et al. (2002): PE HM |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| CGGGAGTCCGGCTTTTAAAAGCCGGACTTTTTTAGCCTCAGT >>>>>>>>> <<<<<<<<< |
pucE |
|